modules/abritamr_run
A NATA accredited tool for reporting the presence of antimicrobial resistance genes in bacterial genomes
bacteriafastaantibiotic resistance
Description
A NATA accredited tool for reporting the presence of antimicrobial resistance genes in bacterial genomes
Output
Name (Type)
Description
Pattern
Tab-delimited file, with a row per sequence, and columns representing functional drug classes
*.summary_matches.txt
Tab-delimited file, with a row per sequence, and columns representing partial hits to functional drug classes
*.summary_partials.txt
Tab-delimited file, with a row per sequence, and columns representing AMRFinderPlus virulence gene classification
*.summary_virulence.txt