modules/angsd_docounts

Calculates base frequency statistics across reference positions from BAM.

angsdpopulation geneticsallele countsdoCounts

https://github.com/nf-core/modules/[...]/modules/nf-core/angsd/docounts

Description

Calculates base frequency statistics across reference positions from BAM.

Input

Name (Type)

Description

Pattern

`0`

Output

Name (Type)

Description

Pattern

`depth_sample`

`depth_global`

`qs`

`pos`

`counts`

`icounts`

`versions`

Tools

angsd
GPL v3, MIT

ANGSD: Analysis of next generation Sequencing Data

http://www.popgen.dk/angsd https://github.com/ANGSD/angsd 10.1186/s12859-014-0356-4