modules/picard_collecthsmetrics
Collects hybrid-selection (HS) metrics for a SAM or BAM file.
alignmentmetricsstatisticsinserthybrid-selectionqualitybam
Input
Name (Type)
Description
Pattern
An interval file that contains the locations of the baits used.
*.{interval_list,bed,bed.gz}
An interval file that contains the locations of the targets.
*.{interval_list,bed,bed.gz}
A reference file to calculate dropout metrics measuring reduced representation of reads.
Optional input.
*.{fa,fasta,fna}