Description

create tabix index from a sorted bgzip tab-delimited genome file

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

tab

:file

TAB-delimited genome position file compressed with bgzip

*.{bed.gz,gff.gz,sam.gz,vcf.gz}

Output

name:type
description
pattern

index

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.{tbi,csi}

:file

Tabix index file (either tbi or csi)

*.{tbi,csi}

versions_tabix

${task.process}

:string

The process the versions were collected from

tabix

:string

The tool name

tabix -h 2>&1 | grep -oP 'Version:\\s*\\K[^\\s]+'

:string

The command used to generate the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

The process the versions were collected from

tabix

:string

The tool name

tabix -h 2>&1 | grep -oP 'Version:\\s*\\K[^\\s]+'

:string

The command used to generate the version of the tool

Tools

tabix
MIT

Generic indexer for TAB-delimited genome position files.