• API Reference
  • Home
  • Pipelines
  • Resources
    • Components
    • Modules
    • Subworkflows
    • Configs
    • Shared configs
  • Docs
  • Community
    • What's happening
    • Blog
    • Events
    • Bytesize Talks
    • Hackathons
    • Training
    • Talks
    • Programs and groups
    • Special interest groups
    • Mentorships
    • Contributors
    • Shop new
    • Connect game 👾
  • About
    • About nf-core
    • Governance
    • Marketing
    • Code of conduct
    • Publications
    • Statistics
    • Join nf-core
    • Select theme
    • Light
    • Dark
    • System
    • Select theme
    • Light
    • Dark
    • System
    Join nf-core Join nf-core

nf-core/tools API documentation
Edit

Automated documentation for nf-core/tools (3.1.1)

API Reference

  • nf_core.pipelines.bump_version
  • nf_core.pipelines.create
  • nf_core.pipelines.download
  • nf_core.pipelines.launch
  • nf_core.pipelines.lint
  • nf_core.pipelines.list
  • nf_core.pipelines.params_file
  • nf_core.pipelines.schema
  • nf_core.pipelines.sync
  • nf_core.pipelines.utils
  • dev
  • 3.2.0
  • 3.1.2
  • 3.1.1
  • 3.1.0
  • 3.0.2
  • 3.0.1
  • 3.0.0
  • 2.14.1
  • 2.14.0
  • 2.13.1
  • 2.13
  • 2.12
  • 2.12.1
  • 2.11
  • 2.11.1
  • 2.10
  • 2.9
  • 2.8
  • 2.7
  • 2.7.2
  • 2.7.1
  • 2.6
  • 2.5
  • 2.5.1
  • 2.4
  • 2.4.1
  • 2.3
  • 2.3.2
  • 2.3.1
  • 2.2
  • 2.1
  • 2.0.1
  • 2.0
  • 1.14
  • 1.13
  • 1.13.3
  • 1.13.2
  • 1.13.1
  • 1.12
  • 1.12.1
  • 1.11
  • 1.10
  • 1.10.2
  • 1.10.1
  • 1.9
  • 1.8
  • 1.7
  • 1.6
  • 1.5
  • Pipeline lint tests
    • actions_awsfulltest
    • actions_awstest
    • actions_ci
    • actions_schema_validation
    • base_config
    • files_exist
    • files_unchanged
    • included_configs
    • index
    • merge_markers
    • modules_config
    • modules_json
    • modules_structure
    • multiqc_config
    • nextflow_config
    • nfcore_yml
    • pipeline_name_conventions
    • pipeline_todos
    • plugin_includes
    • readme
    • schema_description
    • schema_lint
    • schema_params
    • system_exit
    • template_strings
    • version_consistency
  • Subworkflow lint tests
    • index
    • main_nf
    • subworkflow_changes
    • meta_yml
    • subworkflow_tests
    • subworkflow_todos
    • subworkflow_version
  • Module lint tests
    • environment_yml
    • index
    • main_nf
    • meta_yml
    • module_changes
    • module_deprecations
    • module_tests
    • module_patch
    • module_todos
    • module_version
  • API
    • index
    • utils
    • pipelines
      • bump_version
      • create
      • download
      • index
      • launch
      • lint
      • list
      • params file
      • schema
      • sync
      • utils
  • Index
Making awesome workflows since 2018.

Supported by:

+ + +
See the source code for this website on GitHub:
https://github.com/nf-core/website